metabo-idmapper

Item: metabo-idmapper
Rating: 73
Author: M8ven

Converts messy metabolite names into standard database identifiers (KEGG, HMDB, ChEBI, PubChem, InChIKey) and performs crosswalking to Mouse-GEM for metabolic model input, with deterministic tools and an LLM reasoning layer for identity disambiguation.

→ Wooyoung-kim91/metabo-idmapper · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configMETABO_IDMAP_GEM— .../Omics/models/Mouse-GEM/Mouse-GEM.xml

configMETABO_IDMAP_RSCRIPT

configMETABO_IDMAP_PUBCHEM_DELAY

configMIDMAP_ENABLE_TOOLS

configMIDMAP_DISABLE_TOOLS

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 1 concrete improvement we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

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[![M8ven Score](https://m8ven.ai/badge/mcp/wooyoung-kim91-metabo-idmapper-1881dk)](https://m8ven.ai/mcp/wooyoung-kim91-metabo-idmapper-1881dk)

commit: 6b275e43daa7690402be2db5ea2e197948f8f12d

code hash: 011cfdadd450656302a26ca7e506511bf1aab3676c0cc52830c6ca775c02aa4b

verified: 7/28/2026, 8:59:15 AM

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