vmd-hydrate-mcp

Item: vmd-hydrate-mcp
Rating: 69
Author: M8ven

Drive VMD from any LLM — render GROMACS/LAMMPS trajectories and analyze clathrate-hydrate cages through the Model Context Protocol.

→ wjgoarxiv/vmd-hydrate-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configVMD_HYDRATE_MCP_ALLOW_DIR— "env": { "": "/path/to/your/data" }

configVMD_HYDRATE_MCP_DISPLAY— Attended (GUI) Mode -- run fully offscreen (default), or set =gui to open a visible VMD window and watch Claude load, color, rotate, and render your system live.

configVMD_BIN

configVMD_HYDRATE_MCP_TIMEOUT

configVMD_HYDRATE_MCP_MAX_PX

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 5 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/wjgoarxiv-vmd-hydrate-mcp-vhva8u)](https://m8ven.ai/mcp/wjgoarxiv-vmd-hydrate-mcp-vhva8u)

commit: 1a477e7f3f6b3547b305893485678e738398047b

code hash: fd743465ab7f861b2122365288c1b82ca9140b06a2110cf7190bdcec90c94538

verified: 7/30/2026, 9:03:04 AM

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