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PubMed Advanced MCP Server

This MCP server provides 16 intelligent tools for searching, retrieving, and linking biomedical literature from PubMed and PMC. It enables LLM applications to perform complex queries, batch processing, and cross-database linking.

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// key findings
No credential exfiltration, no sensitive file access, no obfuscation
Static analysis found nothing flowing your secrets to unexpected places.
🔐
You'll be asked for 1 credential: NCBI_API_KEY
These are read from process.env at runtime. Make sure you trust where they’ll be sent.
// required environment variables
This server reads these from process.env. You'll be asked to provide them before it can run.
🔐 secretNCBI_API_KEYdocker run -d -p 8000:8000 -e =your-api-key pubmed-mcp
configTOOL_NAMETool identifier for NCBI pubmed-mcp-server
configTOOL_EMAILContact email (required by NCBI) pubmed-mcp@example.com
configMCP_HOST127.0.0.1 MCP_PORT=9000 python -m src.server
configMCP_PORTMCP_HOST=127.0.0.1 =9000 python -m src.server
// full audit trail
The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.
// improvement guidance — verified publishers only
We have 5 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.
// embed badge in your README
[![M8ven Score](https://m8ven.ai/badge/mcp/suyashekhande-pubmed-mcp-advanced-1wa7qh)](https://m8ven.ai/mcp/suyashekhande-pubmed-mcp-advanced-1wa7qh)
commit: 2d2d9ff434c0ff411c455848efac959066c06012
code hash: 5d8c6808f617d53166449d13c9bd63d9ca1387947507878df9817a2e04e3cdb8
verified: 6/18/2026, 10:51:38 AM
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