Scanpy-MCP

Provides a natural language interface for scRNA-Seq analysis using the Scanpy library, supporting operations such as data preprocessing, clustering, and visualization. It enables AI agents and clients to perform complex single-cell transcriptomics workflows through the Model Context Protocol.

→ scmcphub/scanpy-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

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commit: f7ec474e94150083c48cc30e700b0d1625235206

code hash: 9acad7566be716679511c94ae5d1e74f6860ab5012235bd4897db605aad5feb7

verified: 6/17/2026, 12:20:57 PM

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