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glama

reactome-mcp

Enables AI assistants to search, browse, analyze, and export biological pathway data from Reactome through natural language.

→ reactome/reactome-mcp· listed on glama
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// key findings
⚠️
Known vulnerabilities in dependencies: 3 high
Affects packages this MCP installs at runtime. Upgrade or remove the affected dependency.
✅
No credential exfiltration, no sensitive file access, no obfuscation
Static analysis found nothing flowing your secrets to unexpected places.
✅
Open source with a license and README
Anyone can audit the code, the license is declared, and the publisher documents what it does.
🔐
You'll be asked for 1 credential: NEO4J_PASSWORD
These are read from process.env at runtime. Make sure you trust where they’ll be sent.
// known CVEs in dependencies3 high

Disclosed vulnerabilities in this server's declared npm dependencies (via OSV). Whether each is reachable depends on the installed versions.

high@modelcontextprotocol/sdk@1.12.0GHSA-345p-7cg4-v4c7

@modelcontextprotocol/sdk has cross-client data leak via shared server/transport instance reuse

high@modelcontextprotocol/sdk@1.12.0GHSA-8r9q-7v3j-jr4g

Anthropic's MCP TypeScript SDK has a ReDoS vulnerability

high@modelcontextprotocol/sdk@1.12.0GHSA-w48q-cv73-mx4w

Model Context Protocol (MCP) TypeScript SDK does not enable DNS rebinding protection by default

Depend on this server? Get alerted when its CVEs change.Watch this server free →
// required environment variables
This server reads these from process.env. You'll be asked to provide them before it can run.
configALLOWED_ORIGINS
configCYPHER_QUERY_TIMEOUT_MS— 30000 Server-side transaction timeout (ms) for reactome_cypher_ tools. Runaway queries are terminated after this.
configLOG_LEVEL— info debug / info / warn / error. Logs are JSON on stderr; stdout is reserved for the MCP protocol.
configNEO4J_DATABASE— graph.db Matches the default in reactome_neo4j_env.
🔐 secretNEO4J_PASSWORD— neo4j Works against auth-disabled local images (reactome_neo4j_env). Set explicitly for any remote database.
configNEO4J_URI— _(unset)_ Set to enable the optional Cypher tools (see below).
configNEO4J_USER— "": "neo4j",
configPORT
configREACTOME_ANALYSIS_SERVICE_URL— derived from REACTOME_BASE_URL Fine-grained override for the Analysis Service only.
configREACTOME_BASE_URL— REACTOME_CONTENT_SERVICE_URL derived from Fine-grained override for the Content Service only.
configREACTOME_CONTENT_SERVICE_URL— derived from REACTOME_BASE_URL Fine-grained override for the Content Service only.
// full audit trail
The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.
// improvement guidance — verified publishers only
We have 7 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.
// embed badge in your README
[![M8ven Score](https://m8ven.ai/badge/mcp/reactome-reactome-mcp-od348b)](https://m8ven.ai/mcp/reactome-reactome-mcp-od348b)
commit: ee385df5120996442a4cb81d72b16c337cbeff4c
code hash: 2ebee808b7eb3ffd22bf2c3dc7ac7c3582bb976919f02171644511776760b968
verified: 6/22/2026, 1:20:24 PM
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