plant-genomics-mcp

▎ Provides 32 tools for plant-genomics locus lookup across 11 free public backends (Ensembl Plants, Phytozome, UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, BAR). Takes a TAIR-style locus plus optional organism and returns gene metadata, functional/pathway annotation, interactions, co-expression, and literature — in single-locus, batch, and cross-source synthesis.

→ musharna/plant-genomics-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

🔐

You'll be asked for 1 credential: PLANT_GENOMICS_MCP_HTTP_TOKEN

These are read from process.env at runtime. Make sure you trust where they’ll be sent.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configPLANT_GENOMICS_MCP_LIVE— 1 .venv/bin/pytest -q # adds live network probes

configPLANT_GENOMICS_MCP_NCBI_EMAIL— If you use BLAST NCBI etiquette contact. Unset → placeholder + per-call warning; NCBI may throttle.

configPLANT_GENOMICS_MCP_CACHE_DISABLED— unset Any non-empty value makes every cache a no-op.

🔐 secretPLANT_GENOMICS_MCP_HTTP_TOKEN— bearer-token gate (), and NCBI BLAST

configPLANT_GENOMICS_MCP_HTTP_MAX_BODY— 2097152 (2 MiB) Reject POSTs with Content-Length larger than this.

configPLANT_GENOMICS_MCP_HTTP_HOST— 127.0.0.1 HTTP bind address.

configPLANT_GENOMICS_MCP_HTTP_PORT— 8765 HTTP TCP port.

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 3 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/musharna-plant-genomics-mcp-1ebes1)](https://m8ven.ai/mcp/musharna-plant-genomics-mcp-1ebes1)

commit: d968da55db4482ca52f583e286721068a421e433

code hash: 8af945d2cfd2f129d3370c7f61353637a4e12af123b8cc4b78a41f24533be438

verified: 6/18/2026, 10:45:55 AM

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