phylokit-mcp

Item: phylokit-mcp
Rating: 71
Author: M8ven

Phylogenetic inference server driving IQ-TREE 2, always returning per-clade bootstrap support plus model selection, tree comparison, and alignment simulation, with detailed diagnostics like conflicting clades and model uncertainty.

→ musharna/phylokit-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configOMP_NUM_THREADS

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 4 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/musharna-phylokit-mcp-1ofkx8)](https://m8ven.ai/mcp/musharna-phylokit-mcp-1ofkx8)

commit: 37576679f013b306309ac0d4d46a0d3e59153f2f

code hash: af09d51756f3da9a5e09331d2659c3ead47d6e7a62a889d64206d850b0e591eb

verified: 7/30/2026, 7:52:56 PM

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