BioPython MCP Server

Provides comprehensive BioPython capabilities for biological sequence analysis, alignment, database access (GenBank, UniProt, PubMed), protein structure analysis, and phylogenetics through a Model Context Protocol interface for AI-assisted bioinformatics workflows.

→ kmaneesh/biopython-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

🔐

You'll be asked for 1 credential: NCBI_API_KEY

These are read from process.env at runtime. Make sure you trust where they’ll be sent.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configOBSIDIAN_VAULT_PATH— "": "/Users/yourname/Documents/ObsidianVault"

configNCBI_EMAIL— "": "you@example.com",

🔐 secretNCBI_API_KEY— "": "your_ncbi_api_key",

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 1 concrete improvement we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/kmaneesh-biopython-mcp-1q2y1v)](https://m8ven.ai/mcp/kmaneesh-biopython-mcp-1q2y1v)

commit: f7c0b317d9b216c007e7ce414afaddcf1ca66019

code hash: 4a82d307595043d1a0d18bf454d44a738c9852dcebbd2478857621512edeabb9

verified: 6/15/2026, 3:11:12 PM

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