CellTypist MCP

Enables automated cell type annotation in scRNA-seq analysis using CellTypist models, with tools for listing, downloading, training, and annotating cell types via natural language.

→ hyennnnnnn/celltypist-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configCELLTYPIST_MCP_LOG_FILE

configCELLTYPIST_MCP_DATA

configCELLTYPIST_MCP_TRANSPORT

configCELLTYPIST_MCP_HOST

configCELLTYPIST_MCP_PORT

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 3 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/hyennnnnnn-celltypist-mcp-1i5sq4)](https://m8ven.ai/mcp/hyennnnnnn-celltypist-mcp-1i5sq4)

commit: 7bac0e8b009d969ffa013a894b7904c2cbeb1fb3

code hash: 57f617a9ea8aaf287a5c3ca68adc472b00d1c2f6f8544ac2c82b7cf9aa672211

verified: 6/22/2026, 12:09:23 PM

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