Biomolecule Modeling MCP Server

Item: Biomolecule Modeling MCP Server
Rating: 41
Author: M8ven

Enables AI assistants to clean PDB structures and run initial-stage energy relaxation for biomolecular modeling. It provides a structured workflow for preparing structures before production molecular dynamics or coarse-graining pipelines.

→ huangjianhuster/biomolecule-modeling-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

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We have 2 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

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commit: a99f3919a82ce08bf7b0579d2f1681a7ba0e2f90

code hash: 9692f5d1cd80f9f4a723d17f89d35b09775f42639f826229685f467acf20e73c

verified: 6/10/2026, 10:47:17 AM

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