CIViC MCP Server

Enables querying the CIViC database for clinical interpretations of cancer variants through tools like get_variant_evidence and get_variant_assertions.

→ griffithlab/civic-mcp-server · listed on glama

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// key findings

⚠️

Known vulnerabilities in dependencies: 1 high

Affects packages this MCP installs at runtime. Upgrade or remove the affected dependency.

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

🔐

You'll be asked for 2 credentials: OPENAI_API_KEY, openai_api_key

These are read from process.env at runtime. Make sure you trust where they’ll be sent.

// known CVEs in dependencies1 high3 medium

Disclosed vulnerabilities in this server's declared npm dependencies (via OSV). Whether each is reachable depends on the installed versions.

highwrangler@4.2.0GHSA-36p8-mvp6-cv38

Wrangler affected by OS Command Injection in `wrangler pages deploy`

mediumagents@0.0.65GHSA-cvhv-6xm6-c3v4

Cloudflare Agents is Vulnerable to Reflected Cross-Site Scripting in the AI Playground's OAuth callback handler

mediumagents@0.0.65GHSA-r7x9-8ph7-w8cg

Cloudflare Agents SDK has Insecure Direct Object Reference (IDOR) via Header-Based Email Routing

mediumagents@0.0.65GHSA-w5cr-2qhr-jqc5

Cloudflare Agents has a Reflected Cross-Site Scripting (XSS) vulnerability in AI Playground site

Depend on this server? Get alerted when its CVEs change.Watch this server free →

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configDURABLE_OBJECT_URL

🔐 secretOPENAI_API_KEY— We provide an example of doing this with GPT4o-mini. A personal API key is required, update the variable in local_hosting/message_MCP_CIViC.py

🔐 secretopenai_api_key

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 8 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/griffithlab-civic-mcp-server-1omnpe)](https://m8ven.ai/mcp/griffithlab-civic-mcp-server-1omnpe)

commit: 0bcd9cb9ed7b0971be9bc0b5f683d0f37811d873

code hash: bf47077865e3a3527761930af99b567abe794bdf163401d0291987a7a69e7833

verified: 6/22/2026, 12:40:34 PM

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