BioMCP: Biomedical Model Context Protocol

→ genomoncology/biomcp · listed on mcp_so

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Install from

mcp.so github_topic

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

🔐

You'll be asked for 2 credentials: OMIM_API_KEY, S2_API_KEY

These are read from process.env at runtime. Make sure you trust where they’ll be sent.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configBIOMCP_BIN

🔐 secretOMIM_API_KEY

configPHENOTYPE_SPIKE_TIMEOUT

configBIOMCP_MYCHEM_BASE

🔐 secretS2_API_KEY— article PubMed, PubTator3, Europe PMC, PMC OA, NCBI ID Converter, Semantic Scholar (optional auth; recommended) biomcp search article -g BRAF --limit 5

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 1 concrete improvement we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/genomoncology-biomcp-1oz1rc)](https://m8ven.ai/mcp/genomoncology-biomcp-1oz1rc)

commit: 4b51524f1c114369ec870b885876d96d38f5ca5c

code hash: c46963ff54b72bbf3f0e1add4bfc4ae911a946f2c07263fe5a370726f7400b13

verified: 6/30/2026, 9:56:43 AM

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