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2 days ago

biomcp

Provides LLMs with structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol.

→ genomoncology/biomcp· listed on modelscope

Limited view. Automated analysis covers part of this stack. Findings reflect what we verified. Grades reflect the full trust pyramid: code, verification depth, and reputation. New projects cap at C until adoption is earned.

Limited view: static analysis for Rust is partially covered.

How we verified

⚡ Live Monitored: not connected

Verified is a snapshot. Live keeps it current, and builds your track record.

⚡ Connect GitHub → continuous verification on every pushwhy connect →

Who stands behind it

genomoncology

Source: modelscope · also listed on github_topic, mcp.so

Maintenance & responsiveness
as of 2026-08-15
Issue response: median 3d
Issues closed (90d): 3 · 0 open
Releases (90d): 3
Contributor retention: 1/6 stayed · 1 active
Is this your MCP?

Claim it to get a verified publisher badge, a free copy of our full audit findings, and direct contact for any high-priority issues we find. Or connect your repo for our deepest verification, Live Monitored: read-only, revoke anytime. What we access →

⚡ Connect GitHub for Live Monitored

Install from

modelscopeGitHubmcp.so

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// key findings
✅
No credential exfiltration, no sensitive file access, no obfuscation
Static analysis found nothing flowing your secrets to unexpected places.
✅
Open source with a license and README
Anyone can audit the code, the license is declared, and the publisher documents what it does.
🔐
You'll be asked for 3 credentials: BIOMCP_MCPB_PRIVATE_KEY, OMIM_API_KEY, S2_API_KEY
These are read from process.env at runtime. Make sure you trust where they’ll be sent.
// environment variables
To run this server yourself, you supply these values. They go in your own MCP client configuration and stay on your machine. The secret label means the value is sensitive, not that the server mishandles it.
configBIOMCP_MCPB_CERTIFICATE
🔐 secretBIOMCP_MCPB_PRIVATE_KEY
configBIOMCP_MCPB_CHAIN
configGITHUB_JOB
configGITHUB_REPOSITORY
configGITHUB_WORKFLOW_REF
configGITHUB_RUN_ID
configGITHUB_RUN_ATTEMPT
configGITHUB_SHA
configTIKTOKEN_CACHE_DIR
configBIOMCP_BIN
configRUST_TOOLCHAIN
configBIOMCP_SIGNING_POLICY_SHA256
🔐 secretOMIM_API_KEY
configPHENOTYPE_SPIKE_TIMEOUT
configBIOMCP_MYCHEM_BASE
🔐 secretS2_API_KEYarticle PubMed, PubTator3, Europe PMC, PMC OA, NCBI ID Converter, Semantic Scholar (optional auth; recommended) biomcp search article -g BRAF --limit 5
// full audit trail
The findings above are the summary. The full trail, every check we ran, each deduction, the network hosts observed and the dependency advisories, goes to verified publishers, along with an alert whenever a new one lands. Verified publishers can also review each finding and dispute it in one click. Publisher corrections have sharpened several of our checks this month, because the maintainer knows the codebase better than any scanner.
// embed badge in your README
[![M8ven Score](https://m8ven.ai/badge/mcp/genomoncology-biomcp-1h9c9s)](https://m8ven.ai/mcp/genomoncology-biomcp-1h9c9s)
Shows your grade and updates automatically. Prefer no grade? Append ?variant=verified to the badge URL.
commit: 8f3356407f37eb0fa506293f7ec7c7a4f7699520
code hash: edad53682dca174c10db20be5373081f2905f4fdab640febca96d8f80815ee5e
verified: 8/17/2026, 2:34:47 PM
view raw JSON →
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