galaxy-mcp

Item: galaxy-mcp
Rating: 74
Author: M8ven

MCP server for interacting with Galaxy bioinformatics platform, enabling AI assistants to connect to Galaxy instances, search and execute tools, manage workflows, and access other features.

→ galaxyproject/galaxy-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

🔐

You'll be asked for 2 credentials: GALAXY_API_KEY, GALAXY_MCP_SESSION_SECRET

These are read from process.env at runtime. Make sure you trust where they’ll be sent.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

🔐 secretGALAXY_API_KEY— export ="your-api-key"

configGALAXY_URL— export ="https://usegalaxy.org.au/" # Target Galaxy instance

configGALAXY_MCP_DISCOVERY_MODE

configGALAXY_MCP_TRANSPORT— e ="streamable-http" \

configGALAXY_MCP_MAX_SESSION_CONNECTIONS

configGALAXY_MCP_PUBLIC_URL— export ="https://mcp.example.com" # Public base URL for OAuth redirects

🔐 secretGALAXY_MCP_SESSION_SECRET— export ="$(openssl rand -hex 32)"

configGALAXY_MCP_CLIENT_REGISTRY

configGALAXY_MCP_HOST

configGALAXY_MCP_PORT

configGALAXY_MCP_HTTP_PATH

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 6 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/galaxyproject-galaxy-mcp-7wr9jk)](https://m8ven.ai/mcp/galaxyproject-galaxy-mcp-7wr9jk)

commit: 7aec1c861c0bd11f80db67129ed34837a286e378

code hash: 5555ccc1fc561a4a07920e64a40a2fbe97e8198133894e019581764101ed8ffe

verified: 7/19/2026, 8:46:51 AM

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