ChatSpatial

Natural language-driven spatial transcriptomics analysis via MCP. Integrates 60+ methods for preprocessing, visualization, spatial statistics, cell communication, deconvolution, and trajectory analysis.

→ cafferychen777/ChatSpatial · listed on glama

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Glama github_topic PulseMCP

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configCHATSPATIAL_OUTPUT_DIR

configTQDM_DISABLE

configCHATSPATIAL_SCTYPE_CACHE_MAX_ITEMS

configCHATSPATIAL_SCTYPE_CACHE_TTL_SECONDS

configCHATSPATIAL_SCTYPE_R_DIR

configCHATSPATIAL_EXPORT_RESULTS

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 3 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/cafferychen777-chatspatial-1o94ro)](https://m8ven.ai/mcp/cafferychen777-chatspatial-1o94ro)

commit: 71628fffd73c1963ff27d999ba38af96e641e0bd

code hash: 8ca85ca3f94c1638e3974f4e77f348197ffc12e88e18cb934dc4c6e7a50015d8

verified: 6/18/2026, 11:32:05 AM

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