69
/ 100
6 days ago
glama
nucleotide_archive_mcp
An MCP server for searching and accessing RNA sequencing datasets from the European Nucleotide Archive (ENA), supporting bulk, single-cell, and spatial transcriptomics with advanced filtering and download capabilities.
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// key findings
✅
No credential exfiltration, no sensitive file access, no obfuscation
Static analysis found nothing flowing your secrets to unexpected places.
✅
Open source with a license and README
Anyone can audit the code, the license is declared, and the publisher documents what it does.
// required environment variables
This server reads these from
process.env. You'll be asked to provide them before it can run.config
ENA_PORTAL_API_BASEconfig
ENA_BROWSER_API_BASEconfig
ENA_TIMEOUT— 30.0 # Request timeout in secondsconfig
ENA_SEARCH_LIMIT— 20 # Default search result limitconfig
LOG_LEVEL— INFO # DEBUG, INFO, WARNING, ERROR, CRITICALconfig
ENA_MAX_RPS— 10.0 # Rate limiting (requests per second)// full audit trail
The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.
// improvement guidance — verified publishers only
We have 5 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.
// embed badge in your README
[](https://m8ven.ai/mcp/biocontext-ai-nucleotide-archive-mcp-c2kpt1)commit: 0bed288c36e07c2ae2b171ad8277842e655f1464
code hash: 5d0ae28df3369fdb3b9a00bbe8225e592c474ed3d953f5eb0a5d510c96b1afa0
verified: 6/21/2026, 10:48:45 AM