Bio-MCP FastQC Server

Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.

→ bio-mcp/bio-mcp-fastqc · listed on glama

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Glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configBIO_MCP_EXECUTION_MODE

configBIO_MCP_PREFERRED_MODES

configBIO_MCP_SINGULARITY_PATH

configBIO_MCP_DOCKER_PREFIX

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 4 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/bio-mcp-bio-mcp-fastqc-02rgb0)](https://m8ven.ai/mcp/bio-mcp-bio-mcp-fastqc-02rgb0)

commit: e646527dea572994d089a7f537f1b5763f96e738

code hash: ced606baf9a2f4e298672cb7d5a614a9d846da9f855f4270fde5aa3b123c6548

verified: 6/17/2026, 12:20:12 PM

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