BWA MCP Server

Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.

→ bio-mcp/bio-mcp-bwa · listed on glama

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Glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configBIO_MCP_EXECUTION_MODE

configBIO_MCP_PREFERRED_MODES

configBIO_MCP_SINGULARITY_PATH

configBIO_MCP_DOCKER_PREFIX

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 4 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/bio-mcp-bio-mcp-bwa-147bv3)](https://m8ven.ai/mcp/bio-mcp-bio-mcp-bwa-147bv3)

commit: bcd83bc4c40ab998ba0f13691e515532434d1acc

code hash: a8e46efddd70221b330a69b0804b2f64147851017d86ed3057559cb8456e4a58

verified: 6/17/2026, 12:42:03 PM

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