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pulsemcp

Protein Data Bank

Integrates with the Protein Data Bank (PDB) to provide search, retrieval, and analysis capabilities for protein structures, coordinates, quality metrics, and validation data for structural biology research.

→ augmented-nature/pdb-mcp-server· listed on pulsemcp
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// key findings
⚠️
Known vulnerabilities in dependencies: 14 high
Affects packages this MCP installs at runtime. Upgrade or remove the affected dependency.
✅
No credential exfiltration, no sensitive file access, no obfuscation
Static analysis found nothing flowing your secrets to unexpected places.
✅
Open source with a license and README
Anyone can audit the code, the license is declared, and the publisher documents what it does.
// known CVEs in dependencies14 high4 medium12 low

Disclosed vulnerabilities in this server's declared npm dependencies (via OSV). Whether each is reachable depends on the installed versions.

high@modelcontextprotocol/sdk@0.5.0GHSA-w48q-cv73-mx4w

Model Context Protocol (MCP) TypeScript SDK does not enable DNS rebinding protection by default

highaxios@1.6.0GHSA-35jp-ww65-95wh

axios Vulnerable to Full Man-in-the-Middle via Prototype Pollution Gadget in `config.proxy`

highaxios@1.6.0GHSA-3g43-6gmg-66jw

axios Vulnerable to Credential Theft and Response Hijacking via Prototype Pollution Gadget in Config Merge

highaxios@1.6.0GHSA-43fc-jf86-j433

Axios is Vulnerable to Denial of Service via __proto__ Key in mergeConfig

highaxios@1.6.0GHSA-4hjh-wcwx-xvwj

Axios is vulnerable to DoS attack through lack of data size check

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// full audit trail
The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.
// improvement guidance — verified publishers only
We have 4 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.
// embed badge in your README
[![M8ven Score](https://m8ven.ai/badge/mcp/augmented-nature-pdb-mcp-server-1njqt7)](https://m8ven.ai/mcp/augmented-nature-pdb-mcp-server-1njqt7)
commit: d7f2d258494877492f824a299134f30b8b76e950
code hash: b4ac8371bebf75056cac671b70f222205ac8aa0aea778d476f89a79db1ed7dd5
verified: 7/25/2026, 8:52:45 AM
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