NCBI Datasets MCP Server

Provides comprehensive access to the NCBI Datasets API, enabling genomic, taxonomic, and biological data operations through 31 specialized tools.

→ Augmented-Nature/NCBI-Datasets-MCP-Server · listed on glama

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// key findings

⚠️

Known vulnerabilities in dependencies: 15 high

Affects packages this MCP installs at runtime. Upgrade or remove the affected dependency.

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

✅

Open source with a license and README

Anyone can audit the code, the license is declared, and the publisher documents what it does.

🔐

You'll be asked for 1 credential: NCBI_API_KEY

These are read from process.env at runtime. Make sure you trust where they’ll be sent.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

🔐 secretNCBI_API_KEY— (optional): Your NCBI API key for higher rate limits and priority access

configNCBI_BASE_URL

configNCBI_TIMEOUT

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 4 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/augmented-nature-ncbi-datasets-mcp-server-152pnx)](https://m8ven.ai/mcp/augmented-nature-ncbi-datasets-mcp-server-152pnx)

commit: a308fa6f2a06bce359860cf94e159b83fcbaaa39

code hash: fa84a78718320157efd0745a638dd6eb3d5eebf8d3314a38047c05339be058be

verified: 6/15/2026, 1:47:03 PM

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