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pulsemcp

BioPortal

Integrates with BioPortal's API to search, annotate, and explore over 1,200 biological ontologies including medical terminologies like NCIT, DOID, and MESH with batch processing, text annotation, and analytics capabilities for bioinformatics research and clinical text processing.

→ augmented-nature/bioontology-mcp-server· listed on pulsemcp
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// key findings
⚠️
Known vulnerabilities in dependencies: 15 high
Affects packages this MCP installs at runtime. Upgrade or remove the affected dependency.
✅
No credential exfiltration, no sensitive file access, no obfuscation
Static analysis found nothing flowing your secrets to unexpected places.
✅
Open source with a license and README
Anyone can audit the code, the license is declared, and the publisher documents what it does.
🔐
You'll be asked for 1 credential: BIOONTOLOGY_API_KEY
These are read from process.env at runtime. Make sure you trust where they’ll be sent.
// known CVEs in dependencies15 high5 medium10 low

Disclosed vulnerabilities in this server's declared npm dependencies (via OSV). Whether each is reachable depends on the installed versions.

high@modelcontextprotocol/sdk@0.6.0GHSA-w48q-cv73-mx4w

Model Context Protocol (MCP) TypeScript SDK does not enable DNS rebinding protection by default

highaxios@1.7.2GHSA-35jp-ww65-95wh

axios Vulnerable to Full Man-in-the-Middle via Prototype Pollution Gadget in `config.proxy`

highaxios@1.7.2GHSA-3g43-6gmg-66jw

axios Vulnerable to Credential Theft and Response Hijacking via Prototype Pollution Gadget in Config Merge

highaxios@1.7.2GHSA-43fc-jf86-j433

Axios is Vulnerable to Denial of Service via __proto__ Key in mergeConfig

highaxios@1.7.2GHSA-4hjh-wcwx-xvwj

Axios is vulnerable to DoS attack through lack of data size check

Depend on this server? Get alerted when its CVEs change.Watch this server free →
// required environment variables
This server reads these from process.env. You'll be asked to provide them before it can run.
🔐 secretBIOONTOLOGY_API_KEY— export =your_api_key_here
// full audit trail
The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.
// improvement guidance — verified publishers only
We have 4 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.
// embed badge in your README
[![M8ven Score](https://m8ven.ai/badge/mcp/augmented-nature-bioontology-mcp-server-183uh4)](https://m8ven.ai/mcp/augmented-nature-bioontology-mcp-server-183uh4)
commit: ab016d21c2df6902b12d326e44c399a94b8c7904
code hash: 989dc2507cd72f045c77a0b380a8a74014ea5ac3f579d34128900efe8b87f63e
verified: 7/25/2026, 8:52:27 AM
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