foldseek-mcp

Item: foldseek-mcp
Rating: 67
Author: M8ven

Enables protein structure and sequence searches using FoldSeek, with support for multiple databases, automatic model downloads, and structured job management.

→ AltriaPendragon49/foldseek-mcp · listed on glama

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// key findings

✅

No credential exfiltration, no sensitive file access, no obfuscation

Static analysis found nothing flowing your secrets to unexpected places.

// required environment variables

This server reads these from process.env. You'll be asked to provide them before it can run.

configFOLDSEEK_MCP_DATABASE_ROOT— /data/foldseek/databases

configFOLDSEEK_MCP_MODEL_ROOT— /data/foldseek/models

configFOLDSEEK_MCP_RUN_ROOT— /data/foldseek/runs

configFOLDSEEK_MCP_ALLOWED_INPUT_ROOTS

configFOLDSEEK_MCP_FOLDSEEK_BINARY

configFOLDSEEK_MCP_BACKEND

configFOLDSEEK_MCP_DOCKER_IMAGE— openeuler/foldseek:10-941cd33-oe2403sp3

configFOLDSEEK_MCP_AUTO_DOWNLOAD

configFOLDSEEK_MCP_MAX_AUTO_DOWNLOAD_GB

configFOLDSEEK_MCP_MAX_TIMEOUT_SECONDS

configFOLDSEEK_MCP_TRANSPORT

configFOLDSEEK_MCP_HOST

configFOLDSEEK_MCP_PORT

configFOLDSEEK_MCP_PATH

// full audit trail

The full breakdown of what we checked, the deductions that landed, the network hosts, the dependency advisories, and concrete fix guidance is available to verified publishers.

// improvement guidance — verified publishers only

We have 6 concrete improvements we can share with the publisher of this MCP. Each comes with specific guidance to raise the trust score.

// embed badge in your README

[![M8ven Score](https://m8ven.ai/badge/mcp/altriapendragon49-foldseek-mcp-1aawhk)](https://m8ven.ai/mcp/altriapendragon49-foldseek-mcp-1aawhk)

commit: 2dbe2425e6db6cf8a6161d87a30ff085b245383c

code hash: 0761c0072bc48e1f6c0b7fb8f2697986a4f83d3312683a304b36edc274a82685

verified: 6/29/2026, 11:14:26 AM

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